Reactome: A Curated Pathway Database
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IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'DefinedSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'DefinedSet' instances

Class name Attribute name Cardinality
_Deleted replacementInstances +
Polymer repeatedUnit +
Polymerisation output +
Reaction output +
BlackBoxEvent output +
Depolymerisation output +
ReactionlikeEvent output +
FailedReaction output +
Complex hasComponent +
ConcurrentEventSet focusEntity +
EntityWithAccessionedSequence inferredFrom +
EntitySet inferredFrom +
SimpleEntity inferredFrom +
CandidateSet inferredFrom +
OtherEntity inferredFrom +
Polymer inferredFrom +
DefinedSet inferredFrom +
Complex inferredFrom +
PhysicalEntity inferredFrom +
OpenSet inferredFrom +
GenomeEncodedEntity inferredFrom +
IntraChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
InterChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
EntityVertex representedInstance 1
Depolymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
FailedReaction requiredInputComponent +
Polymerisation requiredInputComponent +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
CatalystActivity physicalEntity 1
EntityFunctionalStatus physicalEntity 1
Regulation regulator 1
PositiveGeneExpressionRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
PositiveRegulation regulator 1
Requirement regulator 1
BlackBoxEvent entityOnOtherCell +
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
CandidateSet hasMember +
DefinedSet hasMember +
OpenSet hasMember +
EntitySet hasMember +
Regulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
PositiveRegulation activeUnit +
CatalystActivity activeUnit +
Requirement activeUnit +
OpenSet inferredTo +
PhysicalEntity inferredTo +
DefinedSet inferredTo +
Polymer inferredTo +
Complex inferredTo +
GenomeEncodedEntity inferredTo +
OtherEntity inferredTo +
SimpleEntity inferredTo +
CandidateSet inferredTo +
EntityWithAccessionedSequence inferredTo +
EntitySet inferredTo +
CandidateSet hasCandidate +
Polymerisation input +
Reaction input +
BlackBoxEvent input +
Depolymerisation input +
ReactionlikeEvent input +
FailedReaction input +
VertexSearchableTerm termProvider +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.